Senior Systems Engineer
Atom Computing
Boulder, CO · $140k–$160k a year · Posted August 22, 2026
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November 2026
- #1Best cities for pay after cost of living in the Mountain West$144k · of 11
- #2Best all-round cities for AI careers in the Mountain West82 / 100 · of 11
- #4Best cities for software and engineering jobs in the Mountain West233 openings · of 22
- #4Best all-round cities for new graduates in the Mountain West59 / 100 · of 11
- #4Best all-round cities for mid-career professionals in the Mountain West55 / 100 · of 11
- #5Best all-round cities for remote workers in the Mountain West57 / 100 · of 11
Rankings about engineering jobs
- Best cities for software and engineering jobs #1 San Francisco (3,412 openings)
- Best cities for engineering pay after cost of living #1 San Mateo ($216k)
- Most requested AI skills in engineering jobs #1 AI tools in daily work (6.1%)
- AI tools named most often in engineering jobs #1 Claude (1.7%)
- Employers with the most engineering jobs #1 Amazon (2,992 roles)
Pay compared with the market
This listing pays about $150,000 a year. Across 43 open senior systems engineer listings that state pay, the middle half runs $149,500 to $193,000 and the median is $174,000. That is inside the middle half of those listings, 14% below the median.
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About the job
At Atom Computing, we build quantum computers using arrays of optically trapped neutral atoms that will empower customers to achieve unprecedented computational breakthroughs. Join a world-class team of scientists, engineers, and business professionals to advance the state-of-the-art in quantum computing. We are seeking a Senior Systems Engineer to gather, integrate, and track requirements, risks, and timelines for future generations of Atom Computing systems. As Senior System Engineer you will serve as a technical integrator and architect across Atom Computing’s Research and Product Development programs. This individual will lead system definition, model-based engineering (MBSE) and risk management activities that bridge theory and applications, quantum engineering, control systems, optical engineering, software and hardware disciplines. The ideal candidate can translate theoretical and experimental requirements into a coherent system architecture, and has experience applying systems engineering best practices to emerging technologies.
Job Responsibilities
System Definition & Requirements Management
Lead, and formalise, the existing functional and physical decomposition of current systems to augment the requirements blueprint
Establish and maintain the requirements baseline, traceability matrices, and verification plans using industry standard tools
Translate scientific objectives into verifiable system and subsystem performance requirements
Manage change control processes for evolving architectures and requirements.
Architecture & Design Integration
Develop and document system architecture, including subsystem interactions
Produce system-level design documentation and interface control documents (ICDs)
Coordinate with modeling and simulation teams to evaluate performance trade-offs and scalability of quantum system architectures.
Risk Management & Technical Planning
Identify, quantify, and track technical risks, opportunities, and mitigations
Support development of risk registers and FMEA/FMECA for design reviews (SRR, PDR, CDR, SIR, ORR)
Contribute to the ongoing development of Atom Computing’s Systems Engineering Management Plan.
Integration, Verification, and Validation (IV&V)
Develop and coordinate the Verification and Validation (V&V) plans, linking test protocols to system-level requirements (traceability)
Working with Quantum Engineering & Theory, oversee definition of system-level test protocols
Participate in system integration reviews and readiness assessments to ensure technical maturity and risk reduction.
Collaboration & Communication
Act as technical liaison between Theory, Quantum Engineering, Hardware, Software, Controls, and Optical Engineering
Support customer interactions, including government program reviews, technical interchange meetings, and milestone reporting.
Required Qualifications
BS or higher in Systems Engineering, Physics, Electrical Engineering, Optical Engineering or a related field
5+ years of systems engineering experience in complex, multidisciplinary R&D or production environments (quantum, aerospace, defense, advanced computing, or similar)
Proven ability to lead requirements development, interface control, and V&V planning across engineering and science disciplines
Experience with model-based systems engineering (MBSE) tools and configuration management systems
Strong understanding of system lifecycle processes
Demonstrated experience with risk management frameworks
Experience supporting government-funded research or procurement programs (DoD, DoE, DoC)
Preferred Qualifications
Advanced degree (MS or PhD) in engineering, physics, or a related discipline
Familiarity with quantum computing, atomic, and optical (AMO) physics, or control system integration
Experience preparing and presenting SRR/PDR/CDR artifacts
Knowledge of reliability engineering, fault-tolerant architectures, and data-driven verification.
Atom Computing provides a wide variety of perks and benefits, including fully paid medical, dental, and vision insurance for our employees and their dependents. Additionally, unlimited paid time off, 401K company matching, short- and long-term disability, FSA, dependent care benefits, and life insurance. We also offer drinks, snacks, and catered team lunches in our offices, every day! The base salary range for this position is between $140,000 - $160,000, commensurate with experience. In addition to salary, we offer an annual bonus and equity in the company.